Arachis datasets

BaileyII.gnm1.1JTF: Arachis hypogaea accession Bailey II, genome assembly 1
Fuhuasheng.gnm1.XX5Y: Genome assembly for tetraploid peanut cultivar Fuhuasheng, from Chen et al., 2019
Shitouqi.gnm1.L4VP: Genome assembly for peanut cultivar Shitouqui, from Zhuang et al., 2019.
Tifrunner.gnm1.KYV3: Genome assembly 1 for Arachis hypogaea, cultivar Tifrunner
Tifrunner.gnm2.J5K5: Genome assembly 2 for Arachis hypogaea, cultivar Tifrunner. This version has structural changes relative to assembly 1.

BaileyII.gnm1.ann1.PQM7: Annotation 1 for Arachis hypogaea accession Bailey II, genome assembly 1
Tifrunner.gnm1.ann1.CCJH: Arachis hypogaea accession Tifrunner annotation files from genome assembly 1.0
Tifrunner.gnm2.ann1.4K0L: Gene models for genome assembly 2 for Arachis hypogaea, cultivar Tifrunner.
Tifrunner.gnm2.ann2.PVFB: Annotation 2, using the BIND pipeline, for Arachis hypogaea, cultivar Tifrunner

Tifrunner.gnm2.ann2.expr.Tifrunner.Clevenger_2016: A Developmental Transcriptome Map for Allotetraploid Arachis hypogaea
Tifrunner.gnm2.ann2.expr.Tifrunner.Li_Lu_2014: Expression profiling by high throughput sequencing

Tifrunner.gnm1.mrk.Agarwal_Clevenger_2018: Genetic map of Tifrunner x GT-C20 for the study of early and late leaf spots (ELS and LLS) and tomato spotted wilt virus (TSWV).
Tifrunner.gnm1.mrk.Axiom_Arachis2: Axiom_Arachis2 is a SNP marker set developed by Clevenger, et al. DOI:10.1016/j.molp.2016.11.015
Tifrunner.gnm1.mrk.Axiom_Arachis_58K: Axiom_Arachis_58K is a high-density SNP array with 58,233 SNPs reduced from 163,782 SNPs derived from DNA resequencing and RNA-sequencing of 41 groundnut accessions and wild diploid ancestors.

aradu1_araip1.gnm1.div.Clevenger_Korani_2018: Genotyping of African germplasm collection
aradu1_araip1.gnm1.div.Otyama_Kulkarni_2020: Diversity data for the U.S. peanut core collection, genotyped relative to the diploid A. duranensis and A. ipaensis genome assemblies.
aradu1_araip1.gnm1.div.Otyama_Wilkey_2019: Genotype data for US Peanut Mini Core collection.

K30060.gnm1.W9B1: Genome assembly 1 for Arachis duranensis, accession K30060
K30065.gnm1.M24N: Genome assembly 1 for Arachis duranensis, accession K30065, collected from rio seco Bolivia
V14167.gnm1.SWBf: Genome assembly 1 for Arachis duranensis, accession V14167
V14167.gnm2.J7QH: Genome assembly 2 for Arachis duranensis, accession V14167

V14167.gnm1.mrk.Li_Cui_2022: Markers from the Affymetrix version 2.0 SNP array mapped to the Arachis duranensis V14167 v1.0 assembly.

V14167.gnm1.syn.qmkW: Synteny mappings among the genomes. See genome assemblies indicated in the synteny comparisons.

K30076.gnm1.bXJ8: Genome assembly 1 for Arachis ipaensis, accession K30076.
K30076.gnm2.1GWY: Genome Assembly 2 for A. ipaensis K30076. A high-quality chromosome-scale assembly, based on PacBio RSII and Sequel reads, ordered into pseudomolecules by Dovetail using Hi-C Chicago libraries and the HiRise and SNAP.

K30076.gnm1.ann1.J37m: genome annotations for Arachis ipaensis K30076.gnm1.ann1

K30076.gnm1.mrk.Li_Cui_2022: Markers from the Affymetrix version 2.0 SNP array mapped to the Arachis ipaensis K30076 v1.0 assembly.

K30076.gnm1.syn.S8s4: Synteny mappings among the genomes. See genome assemblies indicated in the synteny comparisons.

K10017.gnm1.DQ4M: Genome assembly 1 for Arachis cardenasii, accession K10017

V10309.gnm1.PFL2: Genome assembly 1 for Arachis stenosperma, genotype V10309

V10309.gnm1.ann1.CZRZ: GenBank RefSeq annotation for Genome assembly 1 for Arachis stenosperma, genotype V10309