Medicago datasets

Medicago sativa

Genomes

CADL_HM342.gnm1.rVNY

Genome assembly of Medicago sativa CADL (HM342)

PI464715.gnm1.8GK6

Pseudomolecule assemblies and unanchored contigs representing 1 haplotype per chromosome for diploid progenitor Medicago sativa spp. caerulea PI464715

RegenSY27x.gnm0_9.2VSM

Genome assembly of Medicago sativa RegenSY27x

XinJiangDaYe.gnm1.12MR

Pseudomolecule assemblies and scaffolds representing 4 haplotypes per chromosome for Medicago sativa XinJiangDaYe

Zhongmu_No_1.gnm1.TRQW

Pseudomolecule assemblies and unanchored contigs representing 1 haplotype per chromosome for Medicago sativa Zhongmu No. 1

Annotations

XinJiangDaYe.gnm1.ann1.RKB9

Gene annotations for pseudomolecule assemblies and scaffolds representing 4 haplotypes per chromosome for Medicago sativa XinJiangDaYe

Expression

XinJiangDaYe.gnm1.ann1.expr.B47_F56.ORourke_Fu_2015

Alfalfa expression atlas for M. sativa ssp. sativa (B47) and M. sativa ssp. falcata (F56) roots, root nodules, leaves, flowers, and elongating and post-elongation stem internodes.

Markers

XinJiangDaYe.gnm1.mrk.3KAlfaDArTagBICU01

3KAlfaDArTagBICU01 is a DArTag panel of 3K loci distributed across the alfalfa genome for use in molecular breeding and genomic insight

Diversity

mixed.tcp.div.Li_Acharya_2012

genotype variants called with respect to a transcriptome assembly, from 27 alfalfa genotypes, from Li, Acharya et al., 2012

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Medicago truncatula

Genomes

A17.gnm5.MVZ2

Scaffold assemblies and pseudomolecule assemblies for Medicago truncatula A17

A17_HM341.gnm4.2GZ9

Scaffold assemblies and pseudomolecule assemblies for Medicago truncatula A17 (HM341)

HM002.gnm1.TWKJ

Genome assembly for Medicago truncatula (HM002)

HM004.gnm1.L7PM

Genome assembly for Medicago truncatula (HM004)

HM005.gnm1.BQQH

Genome assembly for Medicago truncatula (HM005)

HM006.gnm1.XKYH

Genome assembly for Medicago truncatula (HM006)

HM010.gnm1.YDPY

Genome assembly for Medicago truncatula (HM010)

HM017.gnm1.HSRX

Genome assembly for Medicago truncatula (HM017)

HM018.gnm1.3NVM

Genome assembly for Medicago truncatula (HM018)

HM020.gnm1.PNGN

Genome assembly for Medicago truncatula (HM020)

HM022.gnm1.B190

Genome assembly for Medicago truncatula (HM022)

HM023.gnm1.FFHH

Genome assembly for Medicago truncatula (HM023)

HM026.gnm1.PH3S

Genome assembly for Medicago truncatula (HM026)

HM034.gnm1.6VW9

Genome assembly for Medicago truncatula (HM034)

HM050.gnm1.9JPP

Genome assembly for Medicago truncatula (HM050)

HM056.gnm1.JBKN

Genome assembly for Medicago truncatula (HM056)

HM058.gnm1.JVBP

Genome assembly for Medicago truncatula (HM058)

HM060.gnm1.V7B2

Genome assembly for Medicago truncatula (HM060)

HM078.gnm1.Q3TM

Genome assembly for Medicago truncatula (HM078)

HM095.gnm1.FBQK

Genome assembly for Medicago truncatula (HM095)

HM125.gnm1.GFN2

Genome assembly for Medicago truncatula (HM125)

HM129.gnm1.9HG9

Genome assembly for Medicago truncatula (HM129)

HM185.gnm1.1G05

Genome assembly for Medicago truncatula (HM185)

HM324.gnm1.SJSJ

Genome assembly for Medicago truncatula (HM324)

R108.gnmHiC_1.7RWS

An assembly based on the earlier PacBio-based genome (R108_HM340.gnm1.XT6J), put into pseudomolecules using HiC scaffolding.

R108_HM340.gnm1.XT6J

Genome assembly for Medicago truncatula R108 (HM340)

Annotations

A17.gnm5.ann1_6.L2RX

Genome annotation for Medicago truncatula (A17)

A17_HM341.gnm4.ann2.G3ZY

Genome annotation for Medicago truncatula (A17 HM341)

HM004.gnm1.ann1.2XTB

Genome annotation for Medicago truncatula (HM004)

HM010.gnm1.ann1.WV9J

Genome annotation for Medicago truncatula (HM010)

HM022.gnm1.ann1.6C8N

Genome annotation for Medicago truncatula (HM022)

HM023.gnm1.ann1.WZN8

Genome annotation for Medicago truncatula (HM023)

HM034.gnm1.ann1.YR6S

Genome annotation for Medicago truncatula (HM034)

HM050.gnm1.ann1.GWRX

Genome annotation for Medicago truncatula (HM050)

HM056.gnm1.ann1.CHP6

Genome annotation for Medicago truncatula (HM056)

HM058.gnm1.ann1.LXPZ

Genome annotation for Medicago truncatula (HM058).

HM060.gnm1.ann1.H41P

Genome annotation for Medicago truncatula (HM060)

HM078.gnm1.ann1.3RNP

Genome annotation for Medicago truncatula (HM078).

HM095.gnm1.ann1.55W4

Genome annotation for Medicago truncatula (HM095)

HM125.gnm1.ann1.KY5W

Genome annotation for Medicago truncatula (HM125).

HM129.gnm1.ann1.7FTD

Genome annotation for Medicago truncatula (HM129)

HM185.gnm1.ann1.GB3D

Genome annotation for Medicago truncatula (HM185)

HM324.gnm1.ann1.SQH2

Genome annotation for Medicago truncatula (HM324)

R108.gnmHiC_1.ann1.Y8NH

An assembly based on the earlier PacBio-based genome (R108_HM340.gnm1.XT6J), put into pseudomolecules using HiC scaffolding.

R108_HM340.gnm1.ann1.85YW

Genome annotation for Medicago truncatula R108 (HM340)

Expression

A17_HM341.gnm4.ann2.expr.He_Vagner_2009

Affymetrix GeneChip expression data from the Noble Medicago truncatula Gene Expression Atlas

Diversity

A17.gnm5.div.Epstein_Burghardt_2022

Variant calling against Mt5.0 reference from Illumina-based whole genome resequencing across accessions from Medicago HapMap Collection.

A17_HM341.gnm4.div.Stanton-Geddes_Paape_2013

Variant calling from Illumina-based whole genome resequencing across accessions from Medicago HapMap Collection.

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Medicago ruthenica

Genomes

Xinghe.gnm1.KKFS

Pseudomolecule assembly and unanchored contigs for wild diploid Medicago ruthenica Xinghe

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Medicago polymorpha

Genomes

Huaiyang_Jinhuacai.gnm1.ZH4B

Pseudomolecule assembly and unanchored contigs for diploid Medicago polymorpha Huaiyang Jinhuacai

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